PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.001G197500.3
Common NameB456_001G197500
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 320aa    MW: 35290.5 Da    PI: 5.4262
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.001G197500.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.51e-123775244
                        HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHH CS
                 HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiL 44
                        r +h+e E+rRR++iN++f++Lr+++P++    ++K +Ka+ L
  Gorai.001G197500.3 37 RSKHSETEQRRRSKINERFQTLRDIIPQN----DQKRDKASFL 75
                        899*************************9....8999999987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.108.9E-153276IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.14E-123377IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.4273585IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.66E-103575No hitNo description
PfamPF000102.2E-103775IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0084182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MVKSVASAQL HQEEEDDDGE TVKVEGKGSE QKANSNRSKH SETEQRRRSK INERFQTLRD  60
IIPQNDQKRD KASFLLEEKL QIYEGSYQGW SQEATKLIPW RNHRGLAESF IDHSQIMNNG  120
SNCENDGVIP SMVANAQNSI DSDLGDAAVF KTPDHPPVSA TSTVSMQTQS NTIATHGRGS  180
ITFHESASDS ENMVHQPQFQ SWQSRDCLSE SAVVNNSAIA REDLTIRDES VDLSSAYSQG  240
IRNSLTQVLQ SSGVDISQAS ISVKIDVGKR VAAGMTSTPS SSKEKDIQYT SNQEMAQTGV  300
RSYTEESDQA YKRHRTGKS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012486994.10.0PREDICTED: transcription factor BIM3-like
TrEMBLA0A0D2QSQ10.0A0A0D2QSQ1_G
STRINGPOPTR_0004s11180.11e-104(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.16e-52BES1-interacting Myc-like protein 2
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]